Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CHOL | rs9392555 | chr6:4144516 | G/A | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
| CHOL | rs9405220 | chr6:4144575 | G/A | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
| CHOL | rs9405221 | chr6:4144655 | G/C | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
| CHOL | rs9503933 | chr6:4142214 | T/C | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
| CHOL | rs9503934 | chr6:4142386 | C/T | 1.31E-5 | 20 | 26.93 | 0 | 0 | KM Plot |
| CHOL | rs978264 | chr4:30632857 | A/T | 0.000101 | 19 | 23.63 | 38.43 | 0 | KM Plot |
| COAD | rs10016050 | chr4:10747573 | T/C | 0 | 264 | 19.5 | 14.97 | 0 | KM Plot |
| COAD | rs1052582 | chr10:135233840 | C/G | 1.69E-5 | 258 | 19.52 | 16.87 | 13.75 | KM Plot |
| COAD | rs1056521 | chr10:135235890 | T/C | 1.95E-5 | 256 | 19.33 | 16.47 | 13.75 | KM Plot |
| COAD | rs10857711 | chr10:135224059 | G/A | 1.04E-6 | 256 | 19.33 | 15.73 | 14.73 | KM Plot |
| COAD | rs10981711 | chr9:116028004 | G/A | 1.5E-5 | 259 | 18.07 | 17.17 | 3.63 | KM Plot |
| COAD | rs10994731 | chr10:52614189 | A/G | 0 | 256 | 17.45 | 23.93 | 1.97 | KM Plot |
| COAD | rs111509574 | chr12:51542946 | A/G | 2.22E-5 | 259 | 18.9 | 19.95 | 7.87 | KM Plot |
| COAD | rs111602323 | chr12:56550590 | T/A | 5.8E-7 | 263 | 17.45 | 20.4 | 7.23 | KM Plot |
| COAD | rs113191318 | chr12:56550039 | G/A | 2.45E-5 | 263 | 17.45 | 20.17 | 5.73 | KM Plot |